Joanna Chiu

Dr. Joanna Chiu

Position Title
Associate Professor

6348 Storer Hall
Bio

Education:

 

  • B.A., Biology and Music, Mount Holyoke College
  • Ph.D., Molecular Genetics, New York University

 

Departmental Affliliations: Department of Entomology, College of Agricultural and Environmental Sciences.

Graduate Group Affliliations: Entomology (ENT), Biochemistry, Molecular, Cellular, and Developmental Biology (BMCDB), Integrated Genetics and Genomics (IGG), Animal Behavior (ABGG)

Laboratory Research Interests: Molecular Genetics of Animal Behavior, Circadian Rhythm Biology, Posttranslational Regulation of Proteins.

Selected Publications: 

  • Fu, J., K.A. Murphy, M. Zhou, Y.H. Li, V.H. Lam, C.A. Tabuloc, J.C. Chiu, and Y. Liu (2016). Codon usage affects the structure and function of the Drosophila circadian clock protein PERIOD. Genes & Dev. 30(15):1761-1775
  • Kwok, R.S., V.H. Lam, J.C. Chiu (2016). Understanding the role of chromatin remodeling in the regulation of circadian transcription in DrosophilaFLY; DOI: 10.1080/19336934.2016.1143993.
  • Shearer, P.W., J.D. West, V.M. Walton, P.H. Brown; N. Svetec, J.C. Chiu (2016). Seasonal cues induce phenotypic plasticity of Drosophila suzukii to enhance winter survival. BMC Ecology 16:11.
  • Maliti D.V., C.D. Marsden, B.J. Main, N.J. Govella, Y. Yamasaki, T.C. Collier, K. Kreppel, J.C. Chiu, G.C. Lanzaro, H.M. Ferguson, Y. Lee (2016). Investigating associations between biting time in the malaria vector Anopheles arabiensis Patton and single nucleotide polymorphisms in circadian clock genes: support for sub-structure among An. arabiensis in the Kilobero valley of Tanzania. Parasites & vectors 9(1):109.
  • Murphy, K.A., C.A. Tabuloc, K.R. Cervantes, J.C. Chiu (2016). Ingestion of genetically modified yeast symbiont reduces fitness of an insect pest via RNA interference. Sci. Rep. 6, 22587; DOI: 10.1038/srep22587.
  • Murphy, K.A., J.D. West, R.S. Kwok, J.C. Chiu (2016). Accelerating research on Spotted Wing Drosophila management using genomic technologies. J. Pest Sci. DOI 10.1007/s10340-016-0741-z.
  • Yildirim, E., J.C. Chiu, I. Edery (2016). Identification of light-sensitive phosphorylation sites on PERIOD that regulate the pace of circadian rhythms in Drosophila. Mol. Cell. Biol. 36(6): 855-870.
  • Borowiec, M.L., E.K. Lee, J.C. Chiu, D.C. Plachetzki (2015). Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa. BMC Genomics 16:987.
  • Kwok, R.S., Y.H. Li, A.J. Lei, I. Edery, J.C. Chiu (2015). The catalytic and non-catalytic functions of the Brahma chromatin-remodeling protein collaborate to fine-tune circadian transcription in Drosophila. PLoS Genetics 11(7):e1005307.
  • Murphy, K.A., T.R. Unruh, L.M. Zhou, F.G. Zalom, P.W. Shearer, E.H. Beers, V.M. Walton, B. MIller, J.C. Chiu (2015). Using comparative genomics to develop a molecular diagnostic for the identification of an emerging pest Drosophila suzukiiBull. Entomol. Res. 105:364-372.
  • Svetec, N., L. Zhao, P. Saelao, J.C. Chiu, D.J. Begun (2015). Evidence that natural selection maintains genetic variation for sleep in Drosophila melanogaster. BMC Evol. Biol. 15(1):316.
  • Neafsey, D.E., R.M. Waterhouse, M.R. Abai, [.........], J.C. Chiu, [........] N.J. Besansky (2015). Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes. Science 347(6217):1258522.
  • Chiu, J. C., X. Jiang, L. Zhao, C. A. Hamm, J. M. Cridland, P. Saelao, K. A. Hamby, E. K. Lee, R. S. Kwok, G. Zhang, F. G. Zalom, V. M. Walton, and D. J. Begun (2013). Genome of Drosophila suzukii, the Spotted Wing Drosophila. G3: Genes, Genomes, Genetics 3(12):2257-71. doi: 10.1534/g3.113.008185.
  • Johnson, B. R., M. L. Borowiec, J. C. Chiu, E. K. Lee, J. Atallah, and P. S. Ward (2013). Phylogenomics resolves evolutionary relationships among ants, bees, and wasps. Curr. Biol. 23(20):1-5.
  • Hamby, K. A., R. S. Kwok, F. G. Zalom, and J. C. Chiu (2013). Integrating circadian activity and gene expression profiles to predict chronotoxicity of Drosophila suzukii response to insecticides. PLoS ONE 8(7): e68472. doi:10.1371/journal.pone.0068472.
  • Chiu, J. C., K. Kaub, S. Zou, P. Liedo, L. Altamirano-Robles, D. Ingram, and J. Carey (2013). Deleterious effect of suboptimal diet on rest-activity cycle in Anastrepha ludens manifests itself with age. Sci. Rep. 3(1773); DOI:10.1038/srep01773.
  • Chiu, J. C., H. W. Ko, and I. Edery (2011). NEMO/NLK phosphorylates PERIOD to initiate a time-delay phosphorylation circuit that sets circadian clock speed. Cell 145(3):357-370.
  • Chiu, J. C., K. H. Low, D. H. Pike, E. Yildirim, and I. Edery (2010). Assaying locomotor activity to study circadian rhythms and sleep parameters in Drosophila. J Vis. Exp. 43. http://www.jove.com/index
  • Ko, H. W., E. Y. Kim, J. C. Chiu, J. T. Vanselow, A. Kramer, and I. Edery (2010). A hierarchical phosphorylation cascade that regulates the timing of PERIOD nuclear entry reveals novel roles for proline-mediated kinases and GSK-3ß/SGG in circadian clocks. J. Neurosci. 30:12664-12675.
  • Egan, M., E. K. Lee, J. C. Chiu, G. Coruzzi, and R. DeSalle (2009). Gene orthology assessment with OrthologID. Methods Mol. Biol. 537:23-38.
  • Chiu, J. C., J. T. Vanselow, A. Kramer, and I. Edery (2008). The phospho-occupancy of an atypical SLIMB binding site on PERIOD that is phosphorylated by DOUBLETIME controls the pace of the clock. Genes. Dev. 22(13):1758-1772.
  • Chiu, J. C., E. K. Lee, M. G. Egan, I. N. Sarkar, G. M. Coruzzi, and R. DeSalle (2006). OrthologID: Automation of genome scale ortholog identification within a parsimony framework. Bioinformatics 22(6):699-707.
  • Chiu, J. C., E. Brenner, R. DeSalle, M. N. Nitabach, T. C. Holmes, and G. Coruzzi (2002). Phylogenetic and expression analysis of the glutamate-receptor-like gene family in Arabidopsis thaliana. Molecular Biology and Evolution 19(7):1066-1082.
  • Lacombe, B., D. Becker, R. Hedrich , R. DeSalle, M. Hollmann, J. Kwak, J. I. Schroeder, N. Le Novere, G. N. Hong, E. P. Spalding, M. Tester, F. J. Turano, J. Chiu, and G. Coruzzi (2001). The identity of plant glutamate receptors. Science 292:1486-1487.
  • Chiu, J., R. DeSalle, H. M. Lam, L. Meisel, and G. Coruzzi (1999). Molecular evolution of glutamate receptors: a primitive signaling mechanism that existed before plants and animals diverged. Molecular Biology and Evolution 16(6): 826-838.
  • Lam, H. M., J. Chiu, M. H. Hsieh, L. Meisel, I. C. Oliveira, M. Shin, and G. Coruzzi (1998). Glutamate receptor genes in plants. Nature 396:125-126.

 

Lab Research

Research in my laboratory focuses on the regulation of circadian clock and its control over organismal physiology. Circadian clocks regulate molecular oscillations that manifest into physiological and behavioral rhythms. The self-sustained molecular oscillator can be synchronized to daily and seasonal environmental changes, thus allowing organisms to perform necessary tasks at biologically advantageous times of day. Analyses of mammalian and Drosophila transcriptomes using DNA microarrays identified a large number of clock-controlled genes that are involved in diverse physiological processes. Besides being indispensable for the control of daily activities in animals, such as the sleep-wake cycle, locomotor activity, hormone circulation and food intake, defects in circadian rhythms and clock genes have also been implicated in a wide range of human disorders, including chronic sleep orders, various forms of depression, metabolic syndromes, as well as susceptibility to cancer and drug and alcohol addiction.

Although circadian clock genes are not highly conserved across kingdoms (plant, animal, fungi, and bacteria), the regulation of circadian oscillators in all organisms studied to date appears to be variations on the same theme. In general, circadian pacemakers are comprised of a set of species and tissue-specific clock genes that are cell-autonomous and autoregulatory through a series of interconnected transcriptional-translational feedback loops. The circadian oscillator is capable of receiving input signals from external time cues, thereby synchronizing its activity to the environment; and can control cell and organismal physiology by regulating the rhythmic expression of downstream effectors in cell and tissue-specific manners. One feature of the oscillator that is inherent in its design is the rhythmic expression of a number of clock RNAs and daily oscillations in clock protein abundance. Despite the centrality of cycling clock mRNA expression, more recent studies have highlighted the importance of post-translational mechanisms, in particular phosphorylation, in regulating clock protein abundance. In addition, posttranslational modifications of clock proteins are believed to regulate their transcriptional activity, subcellular localization, and protein-protein interaction.

Using a combination of biochemical, molecular genetics, and proteomic approaches, we hope to understand the biochemical and cellular basis of clocks, and the mechanisms by which they regulate organismal physiology.

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